做生信分析,做到一定阶段,会发现比拼的不是代码能力,而是资源。
有很多分析的东东,可能都已经发表了。
所以我们需要站在别人的肩膀上。
NAR20年度数据库包括59个是新的,10发表更新过的。
拿走不谢。
| Database Name | Short description |
| ABCD | AntiBodies chemically defined |
| Alliance of Genome Resources | Data united across model organisms |
| Animal-ImputeDB | Reference panels and imputation methods for animal genomes |
| APAatlas | Human alternative polyadenylation |
| BacFITBase | Bacterial genes relevant to host infection |
| BBCancer | Blood-based biomarkers for cancer |
| CancerGeneNet | Paths from cancer mutations to ‘Hallmark phenotypes’ |
| CancerTracer | Tumor heterogeneity in individual patients |
| CausalDB | Predicted causal variants from GWAS |
| CFEA | Cell-free epigenome atlas |
| ChlamDB | Comparative genomics of the Chlamydiae phylum and the PVC superphylum |
| CRISPRCasdb | CRISPR arrays and Cas proteins |
| DNMIVD | DNA methylation and cancer |
| DrLLPS | Liquid–liquid phase separation of proteins |
| DrugCombDB | Drug combination data |
| ENdb | Experimentally supported enhances in human and mouse |
| EuRBPDB | Eukaryotic RNA binding proteins |
| EWAS Data Hub | DNA methylation array data and metadata |
| ExonSkipDB | Exon skipping |
| FoldamerDB | Peptidic foldamers |
| Gene4Denovo | Human de novo mutations |
| Genus | Topological characteristics of biomolecular structures |
| Gephebase | Genotype–phenotype relationships in eukaryotes |
| GMrepo | Human gut metagenomics data |
| gutMDisorder | Dysbiosis of the gut microbiota |
| GWAS Atlas | GWAS studies across seven plants and two animals |
| KnockTF | Gene expression following TF knockdown/knockout |
| LLPSDB | Liquid–liquid phase separation of proteins |
| LnCeVar | lncRNA SNPs affecting ceRNA action |
| LncTarD | lncRNA-mediated regulatory mechanisms and disease |
| MaGenDB | Functional genomics hub of Malvaceae eg cotton, cacao |
| malaria.tools | Plasmodium co-expression and co-function networks |
| MBKbase | Plant Molecular Breeding Knowledgebase |
| ncRNA-eQTL | eQTL analysis of ncRNAs |
| OGRDB | Open germline receptor database |
| oRNAment | Predicted RBP binding sites in complete transcriptomes |
| PADS Arsenal | Prokaryotic antiviral defense systems |
| PathBank | Pathways in model organisms |
| PGG.Han | Han Chinese genomes |
| PhaSepDB | Phase separation related proteins |
| PhaSepPro | Phase separation related proteins |
| PhenoModifier | Genetic modifiers of human disorders |
| PDBe-KB | Structural and functional annotations of the PDB |
| PmiREN | Plant MicroRNA Encyclopedia |
| Pro-Carb | Protein–carbohydrate interactions |
| QTLbase | Quantitative Trait Loci across human phenotypes |
| SEAweb | Small RNA Expression Atlas |
| snoDB | Human snoRNAs |
| SNP2APA | SNPs and alternative polyadenylation in cancer |
| SpatialDB | Spatially resolved transcriptome |
| SyntDB | lncRNAs and their evolutionary relationships in primates |
| TerrestrialMetagenomeDB | Terrestrial metagenome metadata |
| Thera-SAbDab | Therapeutic antibodies |
| T-psi-C | Experimentally determined tRNA sequences |
| TSEA-DB | Tissue specificity of GWAS traits and phenotypes |
| VARIDT | Variability of Drug Transporter Database |
| VDJbase | Genotype and haplotype data from AIRR sequencing |
| VISDB | Virus Integration Site DataBase |
| YEASTRACT+ | Transcription regulation in yeasts |
| DNAproDB | DNA–protein complex structure analysis |
| EnhancerAtlas | Enhancers in nine species |
| GWAS Central | GWAS datasets |
| MatrisomeDB | Extracellular matrix components |
| MIBiG | Biosynthetic Gene Clusters of Known Function |
| MirGeneDB | Animal miRNA complements |
| MSDB | Microsatellites from all sequenced genomes |
| Ohnologs | Vertebrate ohnologs |
| PolyASite | RNA polyadenylation sites |
| WALTZ-DB | Amyloidogenic peptide sequences |
2020年,遇见更好的自己
